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ddhostallero / BiG-DRP

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NameError: name 'final' is not defined #4

Closed rohandavidg closed 1 year ago

rohandavidg commented 1 year ago

Hi,

Thank you for creating this amazing tool. I seem to be running into an issue in trainer.py

command run: python main.py --mode=train --folder=big --dataroot=data/

Output seen: 27 val-mse:0.7962 batch-mse:0.5520 val-r2:0.1694 batch-r2:0.5348 val-spearman:0.3993 19s 28 val-mse:0.8030 batch-mse:0.3361 val-r2:0.1623 batch-r2:0.5062 val-spearman:0.3919 18s Traceback (most recent call last): File "main.py", line 40, in main(args) File "main.py", line 15, in main main_fxn.main(FLAGS) File "/homes/rgnanaolivu/iBiG-DRP/bigdrp/main_cv.py", line 236, in main test_metrics = nested_cross_validation(FLAGS, drug_feats, cell_lines, labels, label_matrix, normalizer) File "/homes/rgnanaolivu/iBiG-DRP/bigdrp/main_cv.py", line 166, in nested_cross_validation valerror,,_ = fold_validation(hp, FLAGS.seed, network, train_data, File "/homes/rgnanaolivu/iBiG-DRP/bigdrp/main_cv.py", line 58, in fold_validation val_error, metric_names = trainer.fit( File "/homes/rgnanaolivu/BiG-DRP/bigdrp/trainer.py", line 154, in fit if count == 10 and not final: NameError: name 'final' is not defined

Thanks, Rohan

ddhostallero commented 1 year ago

Thanks for letting me know. The repository has been updated.

-David