Does not work for peptides longer than 11 amino acids

[Leob44]

Hello,

Everytime I try to predict binding of a peptide longer than 11 amino acids, I get the error : "could not broadcast input array from shape (25,20) into shape (11,20)".

Any clue how I might solve that ?

Thanks

[ddiem-ri-4D]

Hi @Leob44,

For my model, the input data requires the peptide length to be >=8 and <=11, so the fixed size is always (11,20). Considering that your peptides have a length >=11, you need to exclude those peptides from the test set to use my model.

Thank you for your attention.

Best regards, My Diem