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deLaatLab / pipe4C

4C-seq processing pipeline
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Error in data.frame #27

Closed rrueda89 closed 1 year ago

rrueda89 commented 1 year ago

Hi I was trying out the new version posted on some data that I just got back and it looks like the pipeline is a little broken when reading the data in to R. Rolling back to an older version of the functions.R file seemed to fix it, but just FYI, here is the error I'm seeing on the new verison:

------ Loading functions and configuration file reading config file

------ Reading the VP info file: /project/psychiatry/Madabhushi_lab/s425420/pipe4C-master_CN585/npas4VPinfo.txt Error in data.frame(param = c("pipeline.version", "baseFolder", "VPinfo.file", : arguments imply differing number of rows: 23, 22 Calls: Run.4Cpipeline -> data.frame Execution halted

krijgerp commented 1 year ago

Thanks for posting this. I will have a look. best, Peter

krijgerp commented 1 year ago

Hi Richard, I can not reproduce this error using the latest version of the functions.R . I had a look at the data frame, but there are 23 values for both the param and the value column, so do not understand the error. I will leave this issue open in case anyone has the same error. best, Peter