debbiemarkslab / EVcouplings

Evolutionary couplings from protein and RNA sequence alignments
http://evcouplings.org
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install problem #309

Open ChristophKnapp opened 1 month ago

ChristophKnapp commented 1 month ago

Hello, I'm just getting started with evcouplings. When Itry to install the package I get the following error.

Collecting sklearn (from evcouplings) Using cached sklearn-0.0.post12.tar.gz (2.6 kB) Installing build dependencies ... done Getting requirements to build wheel ... error error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> [15 lines of output] The 'sklearn' PyPI package is deprecated, use 'scikit-learn' rather than 'sklearn' for pip commands.

  Here is how to fix this error in the main use cases:
  - use 'pip install scikit-learn' rather than 'pip install sklearn'
  - replace 'sklearn' by 'scikit-learn' in your pip requirements files
    (requirements.txt, setup.py, setup.cfg, Pipfile, etc ...)
  - if the 'sklearn' package is used by one of your dependencies,
    it would be great if you take some time to track which package uses
    'sklearn' instead of 'scikit-learn' and report it to their issue tracker
  - as a last resort, set the environment variable
    SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True to avoid this error

  More information is available at
  https://github.com/scikit-learn/sklearn-pypi-package
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip

The package sklearn is deprecated for a while now. I'm trying this on python 3.12.

Regards

thomashopf commented 1 month ago

Is this with pip install evcouplings or with the latest develop branch? If it is the former, please install from develop branch for time being

ChristophKnapp commented 1 month ago

pip install evcouplings

OK, will try.

ChristophKnapp commented 1 month ago

That works fine.

Thank you