[interhelp #31950] max number of proteins per analysis batch for TMHMM

decodebiology / interproscan

Automatically exported from code.google.com/p/interproscan

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[interhelp #31950] max number of proteins per analysis batch for TMHMM #58

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago

What steps will reproduce the problem?
1. run an interproscan job with an input file of >50 proteins (and <100 )
2. check the temp folder for that job
3.

What is the expected output? What do you see instead?
I expect to see one file being processed by TMHMM, however, despite the fact 
that for TMHMM the "max number of proteins per analysis batch" is set a 100 
(default value) the initial input file is split in chunks of 50 proteins

What version of the product are you using? On what operating system?
interproscan version 5.8-49

Please provide any additional information below.
TMHMM version: TMHMM-2.0c

Original issue reported on code.google.com by lieven.s...@gmail.com on 28 Nov 2014 at 9:30

GoogleCodeExporter commented 9 years ago

Original comment by Maxim.Sc...@gmail.com on 1 Dec 2014 at 10:47

Changed title: [interhelp #31950] max number of proteins per analysis batch for TMHMM

GoogleCodeExporter commented 9 years ago

Dear Lieven,

Thank you very much for reporting this to us. We will have a look and try to 
investigate what is going on.

Kind Regards,
Maxim

Original comment by Maxim.Sc...@gmail.com on 2 Dec 2014 at 4:10

GoogleCodeExporter commented 9 years ago

Dear Lieven,

I could reproduce the issue. Unfortunately I cannot tell you when we will have 
time to investigate that further.

Thanks for your patience.
Maxim

Original comment by Maxim.Sc...@gmail.com on 2 Dec 2014 at 4:32

Changed state: Accepted

GoogleCodeExporter commented 9 years ago

Thanks Maxim,

no worries, I don't think it's a critical issue!

best,
lieven

Original comment by lieven.s...@gmail.com on 2 Dec 2014 at 5:16

GoogleCodeExporter commented 9 years ago

Hi Lieven,

This is still a problem in InterProScan version 5.8-49.0. But I have updated 
the code now, so the fix will be available in our next release.

Thanks for reporting that!

Regards,

Matthew
InterPro team

Original comment by Mr.Matth...@gmail.com on 16 Dec 2014 at 4:16

GoogleCodeExporter commented 9 years ago

Hi Matthew,

that's great.
thanks a lot for resolving this so swiftly!

best,
lieven

Original comment by lieven.s...@gmail.com on 17 Dec 2014 at 11:42

GoogleCodeExporter commented 9 years ago

Original comment by Maxim.Sc...@gmail.com on 30 Jan 2015 at 2:19

Changed state: Fixed