sidrahmaryam-cyber
commented
4 months ago Hello! I am also facing the issue in installation of ACTIONet. I got the error related to cholmod.h file. I did not save any file here, the error I am getting is -
ACTIONet/src/decomposition/ACTION.cc:2:10: fatal error: cholmod.h: No such file or directory
2 | #include ~~
compilation terminated.
make: ** [/cm/shared/apps/R4.2.3/lib64/R/etc/Makeconf:176: ACTIONet/src/decomposition/ACTION.o] Error 1
make: ~~
compilation terminated.
ACTIONet/src/decomposition/SVD.cc:3:10: fatal error: cholmod.h: No such file or directory
3 | #include ~~
compilation terminated.
make: [/cm/shared/apps/R4.2.3/lib64/R/etc/Makeconf:176: ACTIONet/src/decomposition/SVD.o] Error 1
make: [/cm/shared/apps/R4.2.3/lib64/R/etc/Makeconf:176: ACTIONet/src/downstream/specificity.o] Error 1
ACTIONet/src/misc/my_utils.cc:7:10: fatal error: cholmod.h: No such file or directory
7 | #include ~~
compilation terminated.
make: [/cm/shared/apps/R4.2.3/lib64/R/etc/Makeconf:176: ACTIONet/src/misc/my_utils.o] Error 1
ACTIONet/src/network_tools/network_diffusion.cc:6:10: fatal error: cholmod.h: No such file or directory
6 | #include ~~
compilation terminated.
make: ~~
compilation terminated.
make: *** [/cm/shared/apps/R4.2.3/lib64/R/etc/Makeconf:176: ACTIONet/src/misc/cholmod_wrappers.o] Error 1
ERROR: compilation failed for package 'ACTIONet'
- removing '/home/hs140402/R/x86_64-pc-linux-gnu-library/4.2/ACTIONet' Warning messages: 1: In i.p(...) : installation of package 'RCurl' had non-zero exit status 2: In i.p(...) : installation of package 'RCurl' had non-zero exit status 3: In i.p(...) : installation of package '/tmp/Rtmph0ZtoF/file74d9fb8cb8e0/ACTIONet_3.0.2.tar.gz' had non-zero exit status**
Hello, I have been trying to install this package for days. I first got a cholmod.h error but I resolved it by just copying it into the ACTIONet directory. However now I am facing other fatal error - pasting the log here:
/Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:857:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_desc)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:859:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_asc)); In file included from ACTIONet/src/network_tools/leiden/igraph/vector.c:39: /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:778:32: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] sizeof(BASE), FUNCTION(igraph_vector, sort_cmp)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:857:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_desc)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:859:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_asc)); In file included from ACTIONet/src/network_tools/leiden/igraph/vector.c:45: /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:778:32: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] sizeof(BASE), FUNCTION(igraph_vector, sort_cmp)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:857:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_desc)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:859:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_asc)); In file included from ACTIONet/src/network_tools/leiden/igraph/vector.c:51: /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:778:32: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] sizeof(BASE), FUNCTION(igraph_vector, sort_cmp)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:857:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_desc)); /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:859:47: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] igraph_qsort(vind, n, sizeof(BASE**), FUNCTION(igraph_vector, i_qsort_ind_cmp_asc)); In file included from ACTIONet/src/network_tools/leiden/igraph/vector.c:57: /Users/samvid_k/ACTIONet/src/ACTIONet/include/clustering/leiden/igraph/vector.pmt:778:32: error: incompatible function pointer types passing 'int (const void *, const void *)' to parameter of type 'int (*)(void *, const void *, const void *)' [-Wincompatible-function-pointer-types] sizeof(BASE), FUNCTION(igraph_vector, sort_cmp));Several more similar errors. Please help me resolve these issues - I really think ACTIONet would help me in my project!