create script to standardize peak files

deepPipelines / deepChIPseq

The ChIP-seq pipeline of the DEEP consortia

GNU General Public License v3.0

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create script to standardize peak files #5

Open ptrebert opened 6 years ago

ptrebert commented 6 years ago

read macs2/histoneHMM peak files and standardize format; additionally, flag for blacklist/input enriched...

ptrebert commented 6 years ago

@HeleneLuessem This script would be good candidate for some testing of intermediate results; it should be called at the end of both the narrow and the broad peak calling (and after the intersect step) and should produce format-wise coherent files for both Macs2 and histoneHMM