deepchem / deepgene

Deep Learning Tools for Working with Genomic Datasets for Drug Discovery
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TCGA Python Tooling #1

Open rbharath opened 7 years ago

rbharath commented 7 years ago

The Cancer Genomics Atlas (https://cancergenomole.nih.gov/) is probably the largest repository of cancer related genomics data. Adding tooling that would enable easy construction of DeepChem style deep-learning models on this data would be very useful.

Omics-pipe (https://bitbucket.org/sulab/omics_pipe) appears to be a python toolkit for interfacing with TCGA data, but doesn't appear to have been updated in the last year.