deepchem / moleculenet

Moleculenet.ai Datasets And Splits
MIT License
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Add benchmarks for interaction fingerprints #36

Closed ncfrey closed 3 years ago

ncfrey commented 3 years ago

This PR adds scripts and benchmarks for predicting binding affinities from PDBbind using interaction fingerprints (via RdkitGridFeaturizer) and random forests / fully-connected networks.

Notes on the benchmark:

CCing @rbharath @mufeili

ncfrey commented 3 years ago

Thanks @mufeili for the detailed review! I have addressed the comments above.

CCing @rbharath

ncfrey commented 3 years ago

Closed by #34