deepmodeling / deepmd-kit

A deep learning package for many-body potential energy representation and molecular dynamics
https://docs.deepmodeling.com/projects/deepmd/
GNU Lesser General Public License v3.0
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Add a reminder for the illegal memory error #3818

Closed Yi-FanLi closed 1 month ago

Yi-FanLi commented 1 month ago

When using the GPU version of the neighbor stat code, one may encounter the following issue and the training will stop:

[2024-05-24 23:00:42,027] DEEPMD INFO    Adjust batch size from 1024 to 2048
[2024-05-24 23:00:42,139] DEEPMD INFO    Adjust batch size from 2048 to 4096
[2024-05-24 23:00:42,285] DEEPMD INFO    Adjust batch size from 4096 to 8192
[2024-05-24 23:00:42,628] DEEPMD INFO    Adjust batch size from 8192 to 16384
[2024-05-24 23:00:43,180] DEEPMD INFO    Adjust batch size from 16384 to 32768
[2024-05-24 23:00:44,341] DEEPMD INFO    Adjust batch size from 32768 to 65536
[2024-05-24 23:00:46,713] DEEPMD INFO    Adjust batch size from 65536 to 131072
2024-05-24 23:00:52.071120: E tensorflow/compiler/xla/stream_executor/cuda/cuda_event.cc:29] Error polling for event status: failed to query event: CUDA_ERROR_ILLEGAL_ADDRESS: an illegal memory access was encountered
2024-05-24 23:00:52.075435: F tensorflow/core/common_runtime/device/device_event_mgr.cc:223] Unexpected Event status: 1
/bin/sh: line 1: 1397100 Aborted 

This should be due to some issue of TensorFlow. One may use the environment variable DP_INFER_BATCH_SIZE to avoid this issue.

This PR remind the user to set a small DP_INFER_BATCH_SIZE to avoid this issue.

Summary by CodeRabbit

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Commits Files that changed from the base of the PR and between b89b97bee00c685274f9e8b3657d6b8a51f5839b and e46b23208c5178c8372e9aa52ad1a0178f994f3e.

Walkthrough

The recent update enhances the BatchSizeManager class in batch_size.py by including a log message in its __init__ method. This log message is designed to assist users in dealing with a specific TensorFlow memory access error, aiming to improve the user experience by providing relevant troubleshooting guidance directly in the code.

Changes

File Path Change Summary
deepmd/utils/batch_size.py Added a log message in the __init__ method of the BatchSizeManager class to guide users on handling a TensorFlow memory access error.

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codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 82.48%. Comparing base (8cd3cba) to head (e46b232).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## devel #3818 +/- ## ======================================= Coverage 82.48% 82.48% ======================================= Files 516 516 Lines 49057 49058 +1 Branches 2985 2986 +1 ======================================= + Hits 40466 40467 +1 Misses 7680 7680 Partials 911 911 ```

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njzjz commented 1 month ago

But what is "illeagle"?

Yi-FanLi commented 1 month ago

But what is "illeagle"?

My bad lol. I have renamed this branch and opened a new PR.