deepmodeling / deepmd-kit

A deep learning package for many-body potential energy representation and molecular dynamics
https://docs.deepmodeling.com/projects/deepmd/
GNU Lesser General Public License v3.0
1.46k stars 504 forks source link

fix(tf): fix modifier_type in DeepEval #3855

Closed njzjz closed 3 months ago

njzjz commented 4 months ago

A downgrade in #3213.

Summary by CodeRabbit

coderabbitai[bot] commented 4 months ago
Walkthrough ## Walkthrough The changes primarily focus on enhancing the `DeepEval` class in the `deepmd/tf/infer/deep_eval.py` file by incorporating a new attribute, `modifier_type`, and initializing it correctly. Additionally, a new test file, `test_dplr.py`, has been added to validate the deep potential model's evaluation functionality using TensorFlow for molecular dynamics simulations. ## Changes | Files | Change Summary | |----------------------------------------|-----------------------------------------------------------------------------------------------------| | `deepmd/tf/infer/deep_eval.py` | Initialized `modifier_type` in the constructor, added it to `_init_tensors`, and set it in `_init_attr`. | | `source/tests/tf/test_dplr.py` | Added a new test class `TestDPLR` to test the evaluation functionality of a deep potential model. | ## Sequence Diagram(s) (Beta) ```mermaid sequenceDiagram participant User participant DeepEval participant TensorFlow participant TestDPLR User->>DeepEval: Initialize instance DeepEval->>DeepEval: _init_tensors DeepEval->>TensorFlow: Fetch tensor values TensorFlow-->>DeepEval: Return tensor values DeepEval->>DeepEval: Set modifier_type in _init_attr TestDPLR->>DeepEval: Call evaluation functionality DeepEval->>TensorFlow: Perform evaluation TensorFlow-->>DeepEval: Return evaluation results DeepEval-->>TestDPLR: Return results TestDPLR-->>User: Display test results ```

Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
Commits Files that changed from the base of the PR and between eb474d485f786c95c805cd5dabbb213f1d872725 and f9e0a5a8d34fbb0ac3f18e5157957a2c5abb8262.
Files selected for processing (2) * deepmd/tf/infer/deep_eval.py (3 hunks) * source/tests/tf/test_dplr.py (1 hunks)
Files skipped from review due to trivial changes (1) * source/tests/tf/test_dplr.py
Additional comments not posted (2)
deepmd/tf/infer/deep_eval.py (2)
`204-204`: Initialization of `modifier_type` in `_init_tensors` method. This change aligns with the PR's objective to handle `modifier_type` more effectively by initializing it in the `_init_tensors` method instead of the constructor. --- `265-267`: Handling of `modifier_type` in `_init_attr` method. The update to conditionally set `modifier_type` based on its presence in tensors is a robust enhancement. This ensures that `modifier_type` is only set if it is indeed available, preventing potential errors.
--- Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?
Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit .` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai generate interesting stats about this repository and render them as a table.` - `@coderabbitai show all the console.log statements in this repository.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (invoked as PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. Additionally, you can add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. ### CodeRabbit Configration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://coderabbit.ai/docs) for detailed information on how to use CodeRabbit. - Join our [Discord Community](https://discord.com/invite/GsXnASn26c) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.
codecov[bot] commented 4 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 82.67%. Comparing base (eb474d4) to head (f9e0a5a). Report is 120 commits behind head on devel.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## devel #3855 +/- ## ========================================== - Coverage 82.67% 82.67% -0.01% ========================================== Files 515 515 Lines 49549 49551 +2 Branches 2989 2985 -4 ========================================== + Hits 40965 40966 +1 - Misses 7673 7674 +1 Partials 911 911 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.