deepmodeling / dpgen2

2nd generation of the Deep Potential GENerator
https://docs.deepmodeling.com/projects/dpgen2/
GNU Lesser General Public License v3.0
33 stars 25 forks source link

Support keywords of pair_style for LmpTemplateTaskGroup #254

Closed zjgemi closed 2 months ago

zjgemi commented 2 months ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 months ago
Walkthrough ## Walkthrough The modifications in the code introduce enhancements to the `set_lmp` and `revise_lmp_input_model` functions by adding a new parameter, `extra_pair_style_args`. This allows for the dynamic inclusion of additional arguments in the `pair_style` command and improves the clarity of the `lmp_template_task_group_args` documentation by detailing the new parameter. ## Changes | Files | Change Summary | |--------------------------------------------------------|--------------------------------------------------------------------------------------------------------| | `dpgen2/exploration/task/lmp_template_task_group.py` | Added `extra_pair_style_args` parameter to `set_lmp` and updated `revise_lmp_input_model` to incorporate this parameter into LMP lines. | | `dpgen2/exploration/task/make_task_group_from_config.py` | Enhanced documentation for `lmp_template_task_group_args`, including details for `extra_pair_style_args` and updated `revisions` documentation. |

Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
Commits Files that changed from the base of the PR and between db1e1db98c84c3cef863acc05e9614170dbf5d95 and 44466ea903bb9624faa760062bc5062756c90ab3.
Files selected for processing (2) * dpgen2/exploration/task/lmp_template_task_group.py (2 hunks) * dpgen2/exploration/task/make_task_group_from_config.py (3 hunks)
Additional comments not posted (4)
dpgen2/exploration/task/lmp_template_task_group.py (2)
`46-58`: **LGTM! Integration of `extra_pair_style_args` is well done.** The addition of the `extra_pair_style_args` parameter to the `set_lmp` function enhances its flexibility by allowing additional arguments for the `pair_style` command. --- `146-159`: **LGTM! Conditional appending of `extra_pair_style_args` is correctly implemented.** The changes to the `revise_lmp_input_model` function correctly incorporate the `extra_pair_style_args` parameter, enhancing its capability to handle additional arguments dynamically.
dpgen2/exploration/task/make_task_group_from_config.py (2)
`103-103`: **LGTM! Documentation for `extra_pair_style_args` is clear.** The `doc_extra_pair_style_args` provides a concise and accurate description of the parameter's purpose. --- `129-129`: **LGTM! Documentation for `revisions` is well-defined.** The `doc_revisions` provides a clear explanation of the expected input for the `revisions` parameter, improving the function's usability.
--- Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?
Share - [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai) - [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai) - [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai) - [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)
Tips ### Chat There are 3 ways to chat with [CodeRabbit](https://coderabbit.ai): - Review comments: Directly reply to a review comment made by CodeRabbit. Example: - `I pushed a fix in commit .` - `Generate unit testing code for this file.` - `Open a follow-up GitHub issue for this discussion.` - Files and specific lines of code (under the "Files changed" tab): Tag `@coderabbitai` in a new review comment at the desired location with your query. Examples: - `@coderabbitai generate unit testing code for this file.` - `@coderabbitai modularize this function.` - PR comments: Tag `@coderabbitai` in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples: - `@coderabbitai generate interesting stats about this repository and render them as a table.` - `@coderabbitai show all the console.log statements in this repository.` - `@coderabbitai read src/utils.ts and generate unit testing code.` - `@coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.` - `@coderabbitai help me debug CodeRabbit configuration file.` Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. ### CodeRabbit Commands (invoked as PR comments) - `@coderabbitai pause` to pause the reviews on a PR. - `@coderabbitai resume` to resume the paused reviews. - `@coderabbitai review` to trigger an incremental review. This is useful when automatic reviews are disabled for the repository. - `@coderabbitai full review` to do a full review from scratch and review all the files again. - `@coderabbitai summary` to regenerate the summary of the PR. - `@coderabbitai resolve` resolve all the CodeRabbit review comments. - `@coderabbitai configuration` to show the current CodeRabbit configuration for the repository. - `@coderabbitai help` to get help. Additionally, you can add `@coderabbitai ignore` anywhere in the PR description to prevent this PR from being reviewed. ### CodeRabbit Configuration File (`.coderabbit.yaml`) - You can programmatically configure CodeRabbit by adding a `.coderabbit.yaml` file to the root of your repository. - Please see the [configuration documentation](https://docs.coderabbit.ai/guides/configure-coderabbit) for more information. - If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: `# yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json` ### Documentation and Community - Visit our [Documentation](https://coderabbit.ai/docs) for detailed information on how to use CodeRabbit. - Join our [Discord Community](https://discord.com/invite/GsXnASn26c) to get help, request features, and share feedback. - Follow us on [X/Twitter](https://twitter.com/coderabbitai) for updates and announcements.
zjgemi commented 2 months ago

may be dangerous, for example the user provides a template (copy from deepmd-kit's examples) as pair_style deepmd xxx.pb the model line will be revised as pair_style deepmd xxx.pb out_freq xxx out_file model_devi.out xxx.pb

how about providing a key like extra_pair_style_args and passing it to revise_lmp_input_model?

OK

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 83.33333% with 1 line in your changes missing coverage. Please review.

Project coverage is 84.07%. Comparing base (4967951) to head (44466ea). Report is 3 commits behind head on master.

Files Patch % Lines
dpgen2/exploration/task/lmp_template_task_group.py 80.00% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #254 +/- ## ========================================== + Coverage 84.05% 84.07% +0.02% ========================================== Files 103 103 Lines 5725 5739 +14 ========================================== + Hits 4812 4825 +13 - Misses 913 914 +1 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.