deeporiginbio / deeporigin-client

Deep Origin CLI and Python client
https://client-docs.deeporigin.io/
MIT License
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feat: async methods to speed up api.get_dataframe #73

Open sg-s opened 2 months ago

sg-s commented 2 months ago

problem description

api.get_dataframe (and therefore DataFrame.from_deeporigin) can take extremely long because:

  1. 2 calls to list_database_rows and describe_row take place in series when they could take place in parallel (this is a problem of 700ms vs 300ms)
  2. (more serious problem). there is a place where N DescriebFile calls are made in series, where N is the number of files in the database. this means that the time it takes to fetch data grows with the number of files linearly, and the time for each file resolution is ~350ms.

solution

technical discussion and changes