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deeptime-ml / deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation
https://deeptime-ml.github.io/
GNU Lesser General Public License v3.0
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Implied timescales from deeptime.decomposition.TICA #271

Closed fwaibl closed 1 year ago

fwaibl commented 1 year ago

Dear deeptime developers,

in PyEmma, it is possible to obtain the implied timescales from a TICA object. However, I could not find a way to get the same information (either timescales or the corresponding eigenvalues) in deeptime.

Is there currently a way to obtain the implied timescales? Would it be possible to implement this feature in a similar way to PyEmma? Please correct me if such a feature already exists and I just missed it.

Best regards, Franz

fwaibl commented 1 year ago

Update: I actually found the function I was looking for, it is tica_obj.model.timescales(). Sorry for the disturbance...

clonker commented 1 year ago

Cheers Franz, for completeness you might want to have a look at this example, it contains timescales and chapman kolmogorov test. Happy coding:)