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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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Question about hicConvertFileFormats #323

Closed QianzhaoJ closed 5 years ago

QianzhaoJ commented 5 years ago

Hi: The script:hicConvertFileFormats --matrices $hicpro --inputFormat hicpro --outputFormat cool --bedFileHicpro $hicpro_bed and it worked. But when I used the output '.cool' files to run cooltools compute-expected $cool the error occured KeyError: 'weight1' ,Can you give me sone suggestions ?

Thanks !

joachimwolff commented 5 years ago

Hi,

Please check if you use HiCExplorer version 2.2beta and HiCMatrix version 5. Moreover, the name of the script is „hicConvertFormat“. Because you used the old name my guess is that you use an outdated development version.

Best,

Joachim