bedtools getfasta. You can ask this kind of questions on Biostars since it is much broader than HiCExplorer itself (i.e. how to get a fasta sequences from a bed file).
You can then look for motifs enrichment with MEME or HOMER for instance. Please read the literature.
bedtools getfasta. You can ask this kind of questions on Biostars since it is much broader than HiCExplorer itself (i.e. how to get a fasta sequences from a bed file).You can then look for motifs enrichment with MEME or HOMER for instance. Please read the literature.