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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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hiccompare？？ #426

Closed hzaumsq closed 5 years ago

hzaumsq commented 5 years ago

when I ues the hiccompare to find the difference bwteen samples ,How can konw where is the genome exsit the difference?

gtrichard commented 5 years ago

hicCompareMatrices only makes log2ratio or difference between matrices.

Identifying differential interactions without a priori between two Hi-C matrices is another story not yet covered by HiCExplorer.

There are some R packages to do that but I never tried them myself.