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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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bash: hicDetectLoops: command not found #530

Closed amv33576 closed 4 years ago

amv33576 commented 4 years ago

Hello, I am working with HiCExplorer. Used conda for the installation, so far, I was able to use the commands: hicConvertFormat, hicPlotMatrix, hicCorrectMatrix, hicFindTADs, hicPlotTADs and hicPCA without any problem, but when trying to use hicDetectLoops it responds with the error: bash: hicDetectLoops: command not found

Using: hicexplorer 2.2 and python 3.6

Any ideas?

Thanks,

Anyi

amv33576 commented 4 years ago

I can not get the lastest hicexplorer version using conda installer. I have the last version of conda, all updated. I used conda install hicexplorer -c bioconda -c conda-forge but it is installing hicexplorer bioconda/linux-64::hicexplorer-2.2-py36_0

Thanks

joachimwolff commented 4 years ago

conda install hicexplorer=3.4.3 -c bioconda -c conda-forge

I don’t know why conda uses a wrong version for default.