Closed cgirardot closed 3 years ago
joachimwolff
commented
3 years ago Hi,
There is a validator which checks if the characters entered are ascii. https://github.com/galaxyproject/tools-iuc/blob/master/tools/hicexplorer/hicFindRestrictionSites.xml#L22
Maybe @bgruening who added this validation can explain how to enter a sequence the correct way. For me your sequence looks alright.
Best,
Joachim
cgirardot
commented
3 years ago Thanks for looking into this. It is most likely JS related. I forgot to mention: I was using Chrome and switching to Firefox did not fix it.
joachimwolff
commented
3 years ago So it seems that we use a function that requires Python 3.7. Is it possible for you to upgrade to Python 3.7?
joachimwolff
commented
3 years ago For 3.6 we work on a fix, because our server runs with Python 3.6 too.
cgirardot
commented
3 years ago you mean the python version that runs galaxy I guess. I need to check with Jelle as we actually planned to update to the newer galaxy tonight.
joachimwolff
commented
3 years ago Yes, the Python version that Galaxy is using.
However, Bjoern has a workaround:
<validator type="expression" message="Only ASCII characters are allowed."><![CDATA[all(ord(c) < 128 for c in value)]]></validator>
On our server it works now, I will create a PR at tools IUC with this fix.
joachimwolff
commented
3 years ago cgirardot
commented
3 years ago thx a lot, we'll check this out
Hi @joachimwolff I am now upgrading my galaxy WF to use the latest version and encountered this problem in hicFindRestSite. The ER sequence validation seems to have a bug and complaints even though the sequence is valid.