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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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issue with hicCovertFormat #743

Closed Lattesnow closed 3 years ago

Lattesnow commented 3 years ago

Hey, I am always getting this error but don't know what does it mean. I processed the hic from juicerbox with a .hic file as the output. I tried to convert .hic to cool file with specific resolution. And then I got this: hicConvertFormat --matrices dmsodeephg38new.hic -o dmsodeephg38new.cool --inputFormat cool --outputFormat cool -r 50000 Traceback (most recent call last): File "/mnt/c/Conda/yes/envs/py38/bin/hicConvertFormat", line 7, in main() File "/mnt/c/Conda/yes/envs/py38/lib/python3.8/site-packages/hicexplorer/hicConvertFormat.py", line 166, in main _matrix, cut_intervals, nan_bins, \ ValueError: not enough values to unpack (expected 5, got 2)

joachimwolff commented 3 years ago

Hi,

You need to define hic and not cool as the input format.

Best,

Joachim