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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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Hicexplorer with Micro-C analysis #769

Open xl5525 opened 2 years ago

xl5525 commented 2 years ago

This was previously raised that the newest versions of hicexplore matrix build requires restriction enzyme information, which Micro-C result does not have. I used 3.4.3 version, which works well for Micro-C without re information. But I am also trying hicHyperoptDetectLoops, which is a function introduced in later versions. It is really hard for me to play around with different environments. Would you add a Micro-C mode to the current version?

joachimwolff commented 2 years ago

Maybe we can integrate it in a future release. However, don't expect a new release soon.