How to use hicConvertFormat to get HicPro format file

deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

https://hicexplorer.readthedocs.org

GNU General Public License v3.0

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How to use hicConvertFormat to get HicPro format file #780

Open DRosen1996 opened 2 years ago

DRosen1996 commented 2 years ago

I try to use hicConvertFormat to get HicPro format file but something wrong

hicConvertFormat --matrices palv_CK_sort.txt.polished.hic.500k_500000.h5 --outFileName palv_CK_sort.txt.polished.hic.500k_500000.hicpro --inputFormat h5 --outputFormat hicpro

I think I'm using it wrong, but I can't find an example

joachimwolff commented 2 years ago

You are missing the BED file!

DRosen1996 commented 2 years ago

But shouldn't the BED file be the result file of HiC-pro?like this