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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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Clarifying hicInterIntraTAD #783

Open benayang opened 2 years ago

benayang commented 2 years ago

Hello, I'd like to clarify what "inter-TAD" means in the output from hicInterIntraTAD. Are "inter-TADs" defined as the diamond regions between adjacent TADs?

joachimwolff commented 2 years ago

See: https://hicexplorer.readthedocs.io/en/latest/_images/hicDifferentialTAD_example1.png

The brown and blue region are inter-TAD regions.