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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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Related to hicInterIntraTAD #788

Open ccmeth opened 2 years ago

ccmeth commented 2 years ago

Thanks a lot for the hicInterIntraTAD function, and one question is whether the calculation of intra-TAD considered the diagonal contacts (self-interacting contacts).

Thanks!