Zheng19w
commented
2 years ago hicConvertFormat --matrices /public/home/zheng1996/Hic/hicpro2cool/scrofa-Hi-C-muscle.10000.cool --outFileName scrofa-Hi-C-muscle.10000.h5 --inputFormat cool --outputFormat h5
/public/home/aczhzv5pmn/software/Anaconda/anaconda3-3d/envs/hicexplore/bin/hicPlotMatrix --matrix scrofa-Hi-C-muscle.10000.h5 --outFileName hicexplore_plot.png --log --dpi 300
INFO:numexpr.utils:Note: detected 128 virtual cores but NumExpr set to maximum of 64, check "NUMEXPR_MAX_THREADS" environment variable. INFO:numexpr.utils:Note: NumExpr detected 128 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8. INFO:numexpr.utils:NumExpr defaulting to 8 threads. INFO:hicexplorer.hicPlotMatrix:min: 0.011780609837, max: 3954.39214713
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When I use hicPlotMatrix, I keep reporting errors. How to solve this problem
-rw-rw-r-- 1 zheng1996 zheng1996 9.1K Jun 4 00:23 hicpro2cool1.sh.log -rw-rw-r-- 1 zheng1996 zheng1996 417 Jun 4 18:19 hicpro2cool.sh -rw-rw-r-- 1 zheng1996 zheng1996 8.3K Jun 4 18:26 hicpro2cool.sh.log -rw-rw-r-- 1 zheng1996 zheng1996 314 Jun 4 12:42 scrofa.fa.sizes -rw-rw-r-- 1 zheng1996 zheng1996 179M Jun 4 18:26 scrofa-Hi-C-muscle.10000.cool -rw-rw-r-- 1 zheng1996 zheng1996 251 Jun 4 00:54 Sus_scrofa.fa.sizes
/public/home/aczhzv5pmn/software/Anaconda/anaconda3-3d/envs/hicexplore/bin/hicPlotMatrix --matrix /public/home/zheng1996/Hic/hicpro2cool/scrofa-Hi-C-muscle.10000.cool --outFileName hicexplore_plot.png --log --dpi 300
INFO:numexpr.utils:Note: detected 128 virtual cores but NumExpr set to maximum of 64, check "NUMEXPR_MAX_THREADS" environment variable. INFO:numexpr.utils:Note: NumExpr detected 128 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8. INFO:numexpr.utils:NumExpr defaulting to 8 threads. Killed