Error in process multiple datasets of hicConvertFormat

[skytguuu]

Hi,

Thanks for you developed "HiCExplorer", however I met a problem. When I tried the command to covert the format: ################ ls .matrix | while read id; do hicConvertFormat -m $id --bedFileHicpro genome_500kb.bed --inputFormat hicpro --outputFormat cool -o ${id%.}.cool; done ###############

It failed and report the error: #################### Traceback (most recent call last): File "/home/dell/anaconda3/envs/cooltools/bin/hicConvertFormat", line 7, in main() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicexplorer/hicConvertFormat.py", line 165, in main distance_counts, correction_factors = matrixFileHandlerInput.load() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicmatrix/lib/matrixFileHandler.py", line 51, in load return self.matrixFile.load() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicmatrix/lib/hicpro.py", line 19, in load with open(self.matrixFileName, 'r') as matrix_file: FileNotFoundError: [Errno 2] No such file or directory: '\x1b[0m\x1b[01;32mFGSC_Li_merge_500000.matrix\x1b[0m' Traceback (most recent call last): File "/home/dell/anaconda3/envs/cooltools/bin/hicConvertFormat", line 7, in main() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicexplorer/hicConvertFormat.py", line 165, in main distance_counts, correction_factors = matrixFileHandlerInput.load() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicmatrix/lib/matrixFileHandler.py", line 51, in load return self.matrixFile.load() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicmatrix/lib/hicpro.py", line 19, in load with open(self.matrixFileName, 'r') as matrix_file: FileNotFoundError: [Errno 2] No such file or directory: '\x1b[01;32mGSE82185_MII_rep12_500000.matrix\x1b[0m' Traceback (most recent call last): File "/home/dell/anaconda3/envs/cooltools/bin/hicConvertFormat", line 7, in main() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicexplorer/hicConvertFormat.py", line 165, in main distance_counts, correction_factors = matrixFileHandlerInput.load() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicmatrix/lib/matrixFileHandler.py", line 51, in load return self.matrixFile.load() File "/home/dell/anaconda3/envs/cooltools/lib/python3.7/site-packages/hicmatrix/lib/hicpro.py", line 19, in load with open(self.matrixFileName, 'r') as matrix_file: FileNotFoundError: [Errno 2] No such file or directory: '\x1b[01;32mGV_rep1234_merge_500000.matrix\x1b[0m' ##########################

But when I used one sample to convert the format, it worked well.

I don't know what happened? Could you give me a hand?

Thanks!