Closed hero-outman closed 1 year ago
OK, I make hicDetectLoops
running by those steps:
1.24.1
to 1.20.3
;cleanlab=1.0.1
;numpy>=1.20.3
, it is NOT numpy >= 1.19.*
described in hicexplorer's document.Hope this would help!
In fact the issue was: https://github.com/open2c/cooler/issues/303
Dear fellows, when running hicDetectLoops with the command:
hicDetectLoops -m my_bs10kb.corrected.cool -o loops.bedgraph --maxLoopDistance 2000000 --windowSize 10 --peakWidth 6 --pValuePreselection 0.05 --pValue 0.05
, I got the error:I installed HiCexplorer by
mamba install hicexplorer=3.7.2 -c bioconda -c conda-forge
My failed solution was to install another version of
numpy
, but I got another error oncleanlab
like:ImportError: cannot import name 'LearningWithNoisyLabels' from 'cleanlab.classification'
What are some hints on making hicDetectLoops run?