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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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hicConvertFormat from cool file to hicpro file #843

Open zmbiolab opened 1 year ago

zmbiolab commented 1 year ago

hicConvertFormat -m test.cool -o test.mat --inputFormat cool --outputFormat hicpro -bf test_10000_abs.bed

Traceback (most recent call last): File "/home/miniconda3/bin/hicConvertFormat", line 7, in main() File "/home/miniconda3/lib/python3.7/site-packages/hicexplorer/hicConvertFormat.py", line 284, in main matrixFileHandlerOutput.save(args.outFileName[i], pSymmetric=True, pApplyCorrection=applyCorrection) File "/home/miniconda3/lib/python3.7/site-packages/hicmatrix/lib/matrixFileHandler.py", line 55, in save self.matrixFile.save(pName, pSymmetric, pApplyCorrection) TypeError: save() takes 1 positional argument but 4 were given