deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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mamba/conda installation hicexplorer>=3.5 on Red Hat #855

Open vmukhina opened 1 year ago

vmukhina commented 1 year ago

Hi, I am trying to install hicexplorer>=3.5 to use hicdetectloops function. Instructions work for mac but not for the Red Hat Enterprise Linux release 8.3 (Ootpa) ) where I anyway encounter an error like

Could not solve for environment specs The following packages are incompatible └─ hicexplorer 3.5** is uninstallable because there are no viable options ├─ hicexplorer [3.5|3.5.1] would require │ └─ tqdm >=4.20 , which conflicts with any installable versions previously reported; └─ hicexplorer [3.5.2|3.5.3] would require └─ tqdm >=4.50 , which conflicts with any installable versions previously reported.

tqdm is a simple progress bar tool and I actually have it (pip) installed in my environment tqdm --version 4.65.0 python --version Python 3.8.16

up to now I tested mamba install hicexplorer cleanlab=0.1 -c bioconda -c conda-forge mamba install hicexplorer>3.5 -c bioconda -c conda-forge mamba create --name hicexplorer hicexplorer=3.6 python=3.8 -c bioconda -c conda-forge and some other conda/mamba combinations.

I''ll really appreciate your help in resolving this dependencies conflict. Thanks!