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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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--genome not working #885

Open robertferr opened 6 months ago

robertferr commented 6 months ago

Hi, I downloaded the new version of HiCExplorer with conda and then also did:

git clone https://github.com/deeptools/HiCExplorer/ cd HiCExplorer git checkout aggregateGenome hicex_git_dir=$(pwd) export PATH=$hicex_git_dir/bin:$PATH export PYTHONPATH=$hicex_git_dir:$PYTHONPATH

but the aggreateGenome does not appear and neithe the option --genome seems to work.

Any help?

thanks a lot, Roberto

joachimwolff commented 5 months ago

Hi,

I am not sure what you want to do. The mentioned branch aggregateGenome does not exist: https://github.com/deeptools/HiCExplorer/branches/all

Can you maybe explain from where you have that branch name and what you want to do?

Thanks and best,

Joachim