deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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installation failure :: trained_models missing from requirements #893

Open EricDeveaud opened 4 months ago

EricDeveaud commented 4 months ago

Hello

FYI while trying to install HiCEplorer version 3.7.3 (from release archive) using the described method in README, ie: python setup.py install

I have the following error message.

/opt/gensoft/exe/HiCExplorer/3.7.3/venv/lib/python3.10/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'hicexplorer.trained_models' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'hicexplorer.trained_models' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'hicexplorer.trained_models' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'hicexplorer.trained_models' to be distributed and are
        already explicitly excluding 'hicexplorer.trained_models' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html

        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!

NB python -p pip install . is successfull.

regards

Eric