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deeptools / HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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hicCorrectMatrix correct #895

Open wangguiqian opened 4 months ago

wangguiqian commented 4 months ago

I first use the V991.hic_matrix.h5 file generated by hicBuildMatrix, and then draw the picture: hicCorrectMatrix diagnostic_plot -m V991.hic_matrix.h5 -o V991_corrected.png image

I use this command: hicCorrectMatrix correct -m V991.hic_matrix.h5 --filterThreshold -1.8 5.1 -o 1C32.hic_corrected.h5 Finally, I used the 1C32.hic_corrected.h5 file filtered by the previous step to draw: image

Is there something wrong with the threshold I set? Can you help? I have inquired about this many times but still have no results. Hope that helps.