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deeptools
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HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
https://hicexplorer.readthedocs.org
GNU General Public License v3.0
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Error:'Some.cool' is not an HDF5 file when using hicPlotMatrix
#662
jiangshan529
closed
3 years ago
48
Clarification on application of Juicer KR correction factors to HiCExplorer hic2cool-converted matrices
#661
kalavattam
closed
3 years ago
9
chromatin state border color issue
#660
Drosophilid
closed
3 years ago
8
Multiple enzyme hicFindRestSites support?
#659
gtrichard
closed
3 years ago
4
HicConvertFormat
#658
paolabc
closed
3 years ago
8
metadata missing after .cool to .cool conversion
#657
mj-mage
closed
3 years ago
1
how to choose correct PC
#656
BenxiaHu
closed
3 years ago
2
hicPCA AttributeError : 'list' object has no attribute 'real'
#655
shiyi-pan
closed
3 years ago
18
how to run hicCompartmentalization
#654
BenxiaHu
closed
3 years ago
2
hicPlotTADs can not show Hic map
#653
yancychy
closed
3 years ago
2
UnicodeDecodeError When running hicPCA
#652
shiyi-pan
closed
3 years ago
4
TAD score normalization in hicFindTADs
#651
YichaoOU
closed
3 years ago
1
hicBuildMatrix-TypeError: save() got an unexpected keyword argument 'pHiCInfo'
#650
Yang-Haoyan
closed
3 years ago
2
hicTransform invalid argument
#649
shiyi-pan
closed
3 years ago
6
No module named 'hicexplorer'
#648
shiyi-pan
closed
3 years ago
3
hicPCA and compartmentalization. Setting interaction range.
#647
kimj50
opened
3 years ago
7
hicBuildMatrix - redundant memory usage
#646
StephenRicher
closed
3 years ago
2
No norm in hicCompareMatrices
#645
lldelisle
closed
3 years ago
3
chrUn/chr_random/chrM in hicBuildMatrix?
#644
mxw010
closed
3 years ago
2
WIP Aggregate fix
#643
LeilyR
closed
3 years ago
0
hicMergeMatrixBins warning in uncorrected H5 matrix
#642
rikrdo89
closed
3 years ago
2
After hic to cool convertion, sum of matrix is different at different resolutions
#641
rikrdo89
closed
3 years ago
6
hicPlotMatrix --loop with regions spanning more than one bin.
#640
rikrdo89
closed
3 years ago
1
hicMergeMatrixBins --runningWindow
#639
rikrdo89
closed
3 years ago
1
--outFileContactPairs not working
#638
rikrdo89
closed
3 years ago
4
Fix #635
#637
LeilyR
closed
3 years ago
0
Extracting mean normalized counts of a set of sub-matrices (loops)
#636
rikrdo89
closed
3 years ago
11
hicComparments question
#635
joachimwolff
closed
3 years ago
5
Visualizing TADs without Hi-C data, and only .bed files?
#634
cshoben
closed
3 years ago
2
suggestion for hicAggregate and hicAverage
#633
fgualdr
closed
3 years ago
8
Latest version installation issues
#632
marizazh
closed
3 years ago
3
how to convert .h5 to.hic format
#631
BenxiaHu
closed
3 years ago
1
hicAggregateContacts - strand frame
#630
fgualdr
closed
3 years ago
1
Develop
#629
joachimwolff
closed
3 years ago
0
multiprocessing Python 3.8 macOS
#628
joachimwolff
opened
4 years ago
0
fixed hicaggregate_tests
#627
LeilyR
closed
4 years ago
0
Converting HiCUP output for HiCExplorer
#626
zqzneptune
closed
4 years ago
2
hicPlotTADs not overlapping calculated TADs with Hi-C
#625
dhall1995
closed
4 years ago
3
Sorting Bed file
#624
JayVaz18
closed
3 years ago
1
Converting npz files from DeepHiC pipeline to hic files
#623
smurthy55
closed
4 years ago
2
difference in contact matrices
#622
BenxiaHu
closed
4 years ago
2
hicPCA gene track format
#621
PerrineLacour
closed
3 years ago
1
Put default values in doc
#620
lldelisle
closed
4 years ago
0
h5 format in 3.5.3
#619
PerrineLacour
closed
4 years ago
1
hicPCA and NaN bins
#618
PerrineLacour
closed
3 years ago
3
New structure of hicAggregate
#617
LeilyR
closed
4 years ago
1
Create a matrix of an specific region(s)
#616
luciaalvarez95
closed
4 years ago
2
Develop
#615
joachimwolff
closed
4 years ago
0
hicDifferentialTAD
#614
BenxiaHu
closed
3 years ago
1
hicBuildMatrix 3.5
#613
LeilyR
closed
4 years ago
4
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