search

deeptools / deepTools

Tools to process and analyze deep sequencing data.
Other
668 stars 205 forks source link

Can I draw a whole-genome chromatin metaplot with Deeptools? #1119

Open TheAbsy opened 2 years ago

TheAbsy commented 2 years ago

Hello! I want to know the method of drawing metaplot like this,the width of each box correlates with the chromosome length. C@@6W%DOO @)A(UH`S1~$WN Thank you

dpryan79 commented 2 years ago

You could in theory do that, by making a BED file with 1 entry for each chromosome. However the boxes won't be scaled to the length of the chromosome, since that makes direct comparison more difficult (you could leave X kb on each end unscaled, though, depending on what you want to show).