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[x] Search whether this issue (or a similar issue) has been solved before
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[x] Paste your deepTools version (deeptools --version) and your python
version (python --version) below.
deeptools 3.5.5
Python 3.10.12
[x] Paste the full deepTools command that produces the issue below
(ignore if you simply spotted the issue in the code/documentation).
/cluster/facility/hlhuang/miniconda3/envs/pip/bin/computeMatrix reference-point --referencePoint center -p ${THREADS} -b 3000 -a 3000 -R "/cluster/facility/hlhuang/zifeng001/1file/ATACregion/tss.bed" -S bigwig/*.bw --skipZeros -o tss/TSS.gz
/cluster/facility/hlhuang/miniconda3/envs/pip/bin/plotHeatmap -m tss/TSS.gz -out tss/TSS_Heatmap.pdf --plotFileFormat pdf --dpi 720
[x] Paste the output printed on screen from the command that produces the issue
below (ignore if you simply spotted the issue in the code/documentation).
Question:
I get the result. but i want anno the heatmap using some gene. As you can see, my input is differential peaks or Tss.bed, and i annotate the peaks to gene, Or I want to know which gene's TSS is different in different samples. I know featureAlignedHeatmap function in ChIPpeakAnno package in R. But I don't think it's clear enough, especially when it's presented as anno_block.
Welcome to deepTools GitHub repository! Before opening the issue please check that the following requirements are met :
[x] Search whether this issue (or a similar issue) has been solved before using the search tab above. Link the previous issue if appropriate below.
[x] Paste your deepTools version (
deeptools --version) and your python version (python --version) below. deeptools 3.5.5 Python 3.10.12[x] Paste the full deepTools command that produces the issue below (ignore if you simply spotted the issue in the code/documentation).
[x] Paste the output printed on screen from the command that produces the issue below (ignore if you simply spotted the issue in the code/documentation).
Question: I get the result. but i want anno the heatmap using some gene. As you can see, my input is differential peaks or Tss.bed, and i annotate the peaks to gene, Or I want to know which gene's TSS is different in different samples. I know featureAlignedHeatmap function in ChIPpeakAnno package in R. But I don't think it's clear enough, especially when it's presented as anno_block.
I want annotate the region in heatmap like this
Any help would be appreciated