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deeptools / deepTools

Tools to process and analyze deep sequencing data.
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Could not install deeptools by conda #1320

Closed Sum-low closed 1 month ago

Sum-low commented 3 months ago

Hi! I use conda to install deeptools in my envs, but this error always occurs.

(deeptools) C:\Users\Administrator>conda install -c bioconda deeptools Channels:

LibMambaUnsatisfiableError: Encountered problems while solving:

Could not solve for environment specs The following packages are incompatible └─ deeptools is not installable because there are no viable options ├─ deeptools [3.2.0|3.2.1] would require │ └─ deeptoolsintervals, which does not exist (perhaps a missing channel); └─ deeptools [3.3.0|3.3.1|...|3.5.5] would require └─ deeptoolsintervals >=0.1.8 , which does not exist (perhaps a missing channel).

bgruening commented 3 months ago

Are you trying to install deeptools on Windows? This is at least via conda not supported.

Sum-low commented 3 months ago

Are you trying to install deeptools on Windows? This is at least via conda not supported. You're right! Thank you so much! I forget it. Now successfully installed deeptools on Ubuntu 18.04, but I could not get v3.5.5 in Python 3.11.7, so I installed v3.5.4 with Python 3.7x. Here is error. Could not solve for environment specs The following packages are incompatible ├─ deeptools is installable with the potential options │ ├─ deeptools [1.5.8.2|1.5.9.1|...|3.1.3] would require │ │ └─ python [2.7* |>=2.7,<2.8.0a0 |>=2.7,<3 ], which can be installed; │ ├─ deeptools [2.3.1|2.3.2|...|2.5.0] would require │ │ └─ python 3.4* , which can be installed; │ ├─ deeptools [2.3.1|2.3.2|...|3.1.3] would require │ │ └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed; │ ├─ deeptools [2.3.5|2.3.6|...|3.0.2] would require │ │ └─ python 3.6* , which can be installed; │ ├─ deeptools [3.1.0|3.1.1|3.1.2|3.1.3] would require │ │ └─ python >=3.6,<3.7.0a0 , which can be installed; │ ├─ deeptools 3.1.3 would require │ │ └─ python >=3.7,<3.8.0a0 , which can be installed; │ └─ deeptools [3.2.0|3.2.1|...|3.5.5] would require │ └─ pysam >=0.14.0 with the potential options │ ├─ pysam [0.14.0|0.14.1|...|0.15.3] would require │ │ └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed; │ ├─ pysam [0.14.0|0.14.1|...|0.15.2] would require │ │ └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed; │ ├─ pysam [0.14.0|0.14.1] would require │ │ └─ python 3.6* , which can be installed; │ ├─ pysam [0.14.1|0.15.0|...|0.15.3] would require │ │ └─ python >=3.6,<3.7.0a0 , which can be installed; │ ├─ pysam [0.15.2|0.16.0.1|0.17.0] would require │ │ └─ libdeflate >=1.7,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.15.2|0.16.0|0.16.0.1] would require │ │ └─ libdeflate >=1.6,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.15.2|0.15.3] would require │ │ └─ libdeflate >=1.3,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.15.2|0.15.4] would require │ │ └─ libdeflate >=1.5,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.15.2|0.18.0|0.19.0|0.19.1] would require │ │ └─ libdeflate >=1.10,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.15.2|0.15.3] would require │ │ └─ python >=3.7,<3.8.0a0 , which can be installed; │ ├─ pysam [0.15.2|0.17.0|0.18.0] would require │ │ └─ libdeflate >=1.9,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.15.2|0.19.1|0.20.0|0.21.0] would require │ │ └─ libdeflate >=1.13,<1.22.0a0 , which conflicts with any installable versions previously reported; │ ├─ pysam [0.21.0|0.22.0|0.22.1] would require │ │ └─ libdeflate >=1.18,<1.22.0a0 , which conflicts with any installable versions previously reported; │ └─ pysam 0.22.1 would require │ └─ libdeflate >=1.20,<1.22.0a0 , which conflicts with any installable versions previously reported; └─ pin-1 is not installable because it requires └─ python 3.11.* , which conflicts with any installable versions previously reported.

WardDeb commented 1 month ago

Hi,

Python 3.7 isn't supported anymore, you can re-open and post the error you get while trying with 3.11 if this is still an issue.