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deeptools / deepTools

Tools to process and analyze deep sequencing data.
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plotCorrelation output svg dendogram error #350

Closed lelouar closed 8 years ago

lelouar commented 8 years ago

Hi,

when we make an svg image of the plotCorrelation (heatmap), the dendogram is reverted.

image

the png version is ok.

Maybe this issue is already done (I am still in 2.0.1-25-g697bb3d), sorry if it's the case.

thanks, Raoul

fidelram commented 8 years ago

This is fixed on version 2.3 although we should also fixed in the master branch. Is such a silly issue.

I think scipy changed the way this was displayed at some point and that introduced the problem.

@lelouar if you want to fix the problem yourself simply search for a file called correlation.py and change

z_var = sch.dendrogram(y_var, orientation='right',

by

z_var = sch.dendrogram(y_var, orientation='left',

dpryan79 commented 8 years ago

We'll release a bug fix version (2.2.4) to address this. I expect it'll be available everywhere tomorrow (I'll close the issue once it is).

dpryan79 commented 8 years ago

2.2.4 should be available via bioconda shortly. @fidelram already posted it to pypi. Closing