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deeptools / deepTools

Tools to process and analyze deep sequencing data.
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Galaxy: how to integrate IGV browser? #46

Closed friedue closed 10 years ago

friedue commented 10 years ago

@diehlsa & @bgruening : what is needed to directly load data from Galaxy into IGV browser?

bgruening commented 10 years ago

A few config files needs to be changed, including the httpd.conf.

http://wiki.sb-roscoff.fr/ifb/index.php/IGV_Integration

Furthermore, the user need an IGV installation, or s/he can use the webstart version of IGV.

sarah-peter commented 10 years ago

Hm, I never made any changes to the apache conf on our Galaxy... I guess we mostly need the display application xml files and changes to datatypes conf.

fidelram commented 10 years ago

Looking forward for this.

sarah-peter commented 10 years ago

I added bed, bw and bedgraph (xml and datatypes_conf). Bam is enabled by default. At least bw works for me. Can somebody test from outside the institute?

bgruening commented 10 years ago

works, works, works!!!

default. At least bw works for me. Can somebody test from outside the institute?

Reply to this email directly or view it on GitHub: https://github.com/fidelram/deepTools/issues/46#issuecomment-34048799