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deeptools / pyBigWig

A python extension for quick access to bigWig and bigBed files
MIT License
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[bwGetOverlappingIntervalsCore] Got an error #117

Closed wuzhaoqi1015 closed 2 years ago

wuzhaoqi1015 commented 3 years ago

In [47]: bw = pyBigWig.open('hg19.100way.phyloP100way.bw')

In [48]: bw.stats('chr10', 90984924, 90984926) [bwGetOverlappingIntervalsCore] Got an error Out[48]: [None]

the reason is？

wuzhaoqi1015 commented 3 years ago

[bwGetOverlappingIntervalsCore] Got an error

dpryan79 commented 3 years ago

The most likely cause is running out of memory. There are actually 7 places in the code where this can be triggered, I hadn't foreseen needing to determine which was the root cause (mea culpa).

wuzhaoqi1015 commented 2 years ago

The most likely cause is running out of memory. There are actually 7 places in the code where this can be triggered, I hadn't foreseen needing to determine which was the root cause (mea culpa).

thanks