deeptools / pyBigWig

A python extension for quick access to bigWig and bigBed files
MIT License
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numpy support broken in 0.3.18? #128

Closed francois-a closed 2 years ago

francois-a commented 2 years ago

Hi, is there an issue with numpy compatibility in 0.3.18? I'm seeing the following:

pip3 install pyBigWig=="0.3.17"
python3 -c "import pyBigWig; print(pyBigWig.numpy)"
1

pip3 install pyBigWig=="0.3.18"
python3 -c "import pyBigWig; print(pyBigWig.numpy)"
0

Thanks for looking into it.

dpryan79 commented 2 years ago

It works fine, for example the one available via conda is compiled with support for numpy. Numpy needs to be installed before pyBigWig for that to work.