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degauss-org / nlcd

add landcover variables to your data
GNU General Public License v3.0
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Failed to set permissions for directory '/tmp/s3_downloads': permission denied #8

Open maurosc3ner opened 6 months ago

maurosc3ner commented 6 months ago

Hi,

I am getting the segmentation fault when running this image: $docker run --rm -v $PWD:/tmp ghcr.io/degauss-org/nlcd myfile.csv

image

Additional notes: All other images (geocoder, deprivation, greenspace, and aadt) run without issues. Platform: Apple macbook pro M1 Max 64 GB OS: Monterey 12.6.5 Docker: latest (v4.27.2)

Thanks

cole-brokamp commented 6 months ago

Can you try making a directory called s3_downloads first and see if the same error appears?

I think there is a conflict happening here because the container is using the s3 package to download files to the /tmp directory, which is also the directory we are using to specify the input csv file.

The s3 package downloads files to the package data directory (tools::R_user_dir("s3", "data")), which is platform dependent. On ubuntu, which the docker images runs, this is /home/user/.local/share/R/s3.

You can also try to pass the R_USER_DATA_DIR environment variable to a different location, like /tmp/s3_downloads and see if it will use the created s3_downloads directory.

Lastly, maybe look and check if the docker desktop host has proper permissions to access all of the folders on your hard drive.