Document everything

[degenerat3]

Collection of docs should include:

• general structure of project, explain docker, etc (the readme?)
• setup instructions (should just be some simple docker commands)
• API Documentation (endpoints/parameters/methods, spec for modules, etc)
• Command execution explanation (modes, arguments, etc)
• Docs for each module (up to developer of module)

[degenerat3]

Most of the "critical" documentation is done. There can always be more, but stuff will be added later on. Current docs are acceptable for alpha release