how to calculate the insulation score for higher resolution Hi-C data

dekkerlab / crane-nature-2015

code associated with crane-nature-2015, 10.1038/nature14450

Apache License 2.0

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how to calculate the insulation score for higher resolution Hi-C data #10

Open yhx-tj opened 5 years ago

yhx-tj commented 5 years ago

Hi,

I wonder if this method can used to calculate the insulation score for high resolution contact matrix(eg.5kb)? how to set the insulation square(-b) and insulation delta span(-ids) parameters?

Thank you! Best wishes.

Eillie

pkubgmlixs commented 4 years ago

Hello Eillie,

I encountered the same situation as you told and have no idea how to assgin parameters. Have you solved your questions?

Thanks in advance!

Kevin