Merge redev with main - Githubissues

dekoning-lab / slim-tree

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Merge redev with main #79

Open ebrintn opened 1 year ago

ebrintn commented 1 year ago

Needed for merge:

[x] Fix bugs issues #78 and #77
[x] Update output (iss #80)
[ ] Update examples
[x] Update readme (iss #66)
[x] Merge - Erin to do once rest is complete

ebrintn commented 8 months ago

Are we close to being able to do this @afarineshp

ebrintn commented 3 months ago

Finish unit tests and examples and then can merge finally

ebrintn commented 1 month ago

Unit tests finished and bugs fixed

ebrintn commented 1 month ago

@afarineshp I wanted to let you know that I found one more bug in the fitness of genomes that had premature stop codons when I was fixing this - you should know that the software was making all fitnesses effectively 0 regardless of where the stop codon was, instead of cutting everything post stop codon off.