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dellacortelab / prospr

ProSPr: Protein Structure Prediction
MIT License
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plmDCA version questions #10

Open JoAn30 opened 4 years ago

JoAn30 commented 4 years ago

Hi, I have been trying to use your model via your docker image, but it seems to be importing a plmDCA module. I t keeps running an error when running it, and I want to know if the version on github is the same as in the docker image and if not, is there any way of getting the version you are using on github?

For transparency this is my error:

Minimizing g_r for node r=181
Minimizing g_r for node r=182
Minimizing g_r for node r=183
Elapsed time is 696.376656 seconds.
Index in position 3 exceeds array bounds.

Error in plmDCA_asymmetric (line 153)

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/MATLAB/MATLAB_Runtime/v94/toolbox/compiler_sdk/pysdk_py/matlab_pysdk/runtime/deployablefunc.py", line 80, in __call__
    nlhsWasSpecified, stdoutObj, stderrObj).result()
  File "/usr/local/MATLAB/MATLAB_Runtime/v94/toolbox/compiler_sdk/pysdk_py/matlab_pysdk/runtime/futureresult.py", line 135, in result
    raise e
  File "/usr/local/MATLAB/MATLAB_Runtime/v94/toolbox/compiler_sdk/pysdk_py/matlab_pysdk/runtime/futureresult.py", line 123, in result
    raise e
  File "/usr/local/MATLAB/MATLAB_Runtime/v94/toolbox/compiler_sdk/pysdk_py/matlab_pysdk/runtime/futureresult.py", line 113, in result
    self._nlhs, out=self._out, err=self._err)
matlab_pysdk.runtime.MatlabRuntimeError: An error occurred when evaluating the result from a function. Details: 
  File /root/.mcrCache9.4/plmDCA0/plmDCA/plmDCA_asymmetric.m, line 153, in plmDCA_asymmetric
Index in position 3 exceeds array bounds.
YoshitakaMo commented 4 years ago

Hi, The issue may be solved by https://github.com/dellacortelab/prospr/issues/6#issuecomment-572852086