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delt0r / msms

A coalsecent simulator with selection
www.mabs.at/ewing/msms
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Second example from quickstart page fails #51

Open winni2k opened 5 years ago

winni2k commented 5 years ago

The second example (Adding selection) from the quickstart web page fails on my machine. The command in question is msms -N 10000 -ms 10 1000 -t 1 -SAA 100 -Sa 50 -SF 0. The error I get is:

msms/bin/msms -N 10000 -ms 10 1000 -t 1 -SAA 100 -Sa 50 -SF 0
-SAA has an incorrect number of arguments. [100, -Sa, 50]
options you tried was:
-SAA 100 -Sa 50
Option help:
-SAA double
    The selection strength of the Homozygote derived type, alpha=2*N*s

at.mabs.cmdline.CmdLineParseException: -SAA has an incorrect number of arguments. [100, -Sa, 50]
    at at.mabs.cmdline.CmdLineParser$DelimitedArgs.<init>(CmdLineParser.java:393)
    at at.mabs.cmdline.CmdLineParser.processArguments(CmdLineParser.java:128)
    at at.MSLike.updateParser(MSLike.java:215)
    at at.MSLike.<init>(MSLike.java:121)
    at at.MSLike.main(MSLike.java:542)
    at at.MSLike.main(MSLike.java:587)

These are the steps I took to generate this error:

wget https://www.mabs.at/ewing/msms/msms3.2rc-b163.zip
unzip msms3.2rc-b163.zip
chmod +x msms/bin/msms

msms/bin/msms -N 10000 -ms 10 1000 -t 1 -SAA 100 -Sa 50 -SF 0
winni2k commented 5 years ago

It looks like there is a typo on the quickstart web page. The argument -Sa does not appear to be a valid argument. It looks like replacing -Sa with -SAa works.