hamid-hassani
commented
5 months ago Exact error:
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
Cell In[1], line 35
31 import pandas as pd
33 import matplotlib as mpl
---> 35 from astrodendro import Dendrogram, Structure, ppv_catalog, pruning
37 # sys.path.append(os.path.join(os.getenv('HOME'),'python'))
38
39
(...)
49 # Peak finding routines
50 # &%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%&%
52 def lmax_from_assignment(data, assign, skipassign=0):
File /mnt/home/hhassani/anaconda3/lib/python3.9/site-packages/astrodendro/__init__.py:3
1 # Licensed under an MIT open source license - see LICENSE
----> 3 from .dendrogram import Dendrogram, periodic_neighbours
4 from .structure import Structure
5 from .analysis import ppv_catalog, pp_catalog
File /mnt/home/hhassani/anaconda3/lib/python3.9/site-packages/astrodendro/dendrogram.py:23
20 return sorted(d, key=lambda s: s.idx)
22 # utility dict to offsets of adjacent pixel list
---> 23 _offsets = dict((ndim, np.concatenate((
24 np.identity(ndim),
25 np.identity(ndim) * -1)).astype(np.int))
26 for ndim in range(1, 8))
28 # the formula above generalizes this special case
29 #_offsets[3] = np.array([(0, 0, -1), (0, 0, 1),
30 # (0, -1, 0), (0, 1, 0),
31 # (-1, 0, 0), (1, 0, 0)])
34 class Dendrogram(object):
File /mnt/home/hhassani/anaconda3/lib/python3.9/site-packages/astrodendro/dendrogram.py:25, in <genexpr>(.0)
20 return sorted(d, key=lambda s: s.idx)
22 # utility dict to offsets of adjacent pixel list
23 _offsets = dict((ndim, np.concatenate((
24 np.identity(ndim),
---> 25 np.identity(ndim) * -1)).astype(np.int))
26 for ndim in range(1, 8))
28 # the formula above generalizes this special case
29 #_offsets[3] = np.array([(0, 0, -1), (0, 0, 1),
30 # (0, -1, 0), (0, 1, 0),
31 # (-1, 0, 0), (1, 0, 0)])
34 class Dendrogram(object):
File /mnt/home/hhassani/anaconda3/lib/python3.9/site-packages/numpy/__init__.py:324, in __getattr__(attr)
319 warnings.warn(
320 f"In the future `np.{attr}` will be defined as the "
321 "corresponding NumPy scalar.", FutureWarning, stacklevel=2)
323 if attr in __former_attrs__:
--> 324 raise AttributeError(__former_attrs__[attr])
326 if attr == 'testing':
327 import numpy.testing as testing
AttributeError: module 'numpy' has no attribute 'int'.
`np.int` was a deprecated alias for the builtin `int`. To avoid this error in existing code, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
0.2.0 version of astrodendro uses np.int, deprecated in Numpy 1.20. Installation documentation directs users to pip install, neither the release package nor the installation documentation notes this conflict.
Installation documentation and PyPI should probably both be updated to note the dependency, and perhaps documentation could be updated to recommend using the developer build to avoid this.