Open mhmism opened 1 year ago
Hi @mhmism. The db
parameter should be set as --db "/gpfs/work5/0/gusr0570/viroprofiler"
I have set the db parameter as you suggested but also does not work out. Also tried to bind the directory in singularity (as writable), but no luck. I tried multiple solutions so far with no luck.
Description of the bug
Nextflow is checking Iphop database at the home directory even after specifying another db directory. This will cause error at Iphop step
Command used and terminal output
Relevant files
command.log of 10/bc6e46......
INFO: Converting SIF file to temporary sandbox... Pblm, I could not find directory /home/mibrahim30/viroprofiler/iphop/Sept_2021_pub. Maybe the host database directory was not specified with the --db_dir and is not the default "db/" directory ? INFO: Cleaning up image...
System information
Nextflow version 23.04.1 Hardware HPC Executor slurm