Open nitinShukla1912 opened 1 year ago
Hi @nitinShukla1912, thanks for reporting the bug.
nextflow pull deng-lab/viroprofiler
, and run it again?--db /path/to/database
when setting up and running the pipeline. One potential problem of changing database path is that if the new path is in a different hard disk, you need to bind that disk to singularity using the -B /path/to/another/disk
parameter in the config file, as show in the custom config file.Installing the pipeline using only conda should be possible, but I need some time to test it. In addition, this approach is not encouraged by nf-core due to poorer reproducibility. Please try singularity first, if still fails, let's figure out other approach.
Hi @rujinlong Also please update the https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/taxdmp_2023-06-01.zip, in your setup_db.nf script.
Thanks in advance
Description of the bug
Caused by: Process
VIROPROFILER:TAXONOMY_MMSEQS
terminated with an error exit status (1)/home/user/viroprofiler/taxonomy/mmseqs_vrefseq/refseq_viral does not exist
Even I have not configured the optional 3 databses,
Can we install this pipeline in local machine instead of running on docker + singularity
Command used and terminal output
Relevant files
No response
System information
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