Closed kapsakcj closed 4 years ago
Thanks for catching that. We've added biopython and the version (1.73) we used into the dependencies. We will do some troubleshooting using biopython 1.74 and try to fix this problem.
Thanks for adding this to the README. Really helps those of us that install seqsero2 from source! Closing this issue
Seems like biopython is a dependency for SeqSero2, however it is not listed in the list of dependencies in the README.
Also the latest release of biopython 1.74 (July 16, 2019) does not work with SeqSero2, particularly in allele mode. I rolled back to biopython 1.68 and it worked. I didn't test the versions in between, though it will likely work up through 1.73 since this issue occurred recently. See below